Databases
The following databases are used in our research practices:
Role: Principal Developer. Released on 05/31/2009.
Madison Metabolomics consortium database (MMCD).
Role: Co-Developer. Released in 2006
Role: Project Leader. Released on 04/05/2019.
Biological Magnetic Resonance Bank (BMRB) metabolomics library.
Role: Co-Developer. Released in 2005
Software Platforms
The following software tools are used in our research practices:
FUGU-MS
FUGU-MS, an open-source software platform developed in R for statistical filtering, clustering, and visualizing of high-resolution LC-MS data
rNMR
rNMR is an open source software package for visualizing and interpreting one and two dimensional NMR data
MINT
The Metabolomics Integrator (MINT) is a post-processing tool for liquid chromatography-mass spectrometry (LCMS) based metabolomics
ProteomicsQC
A quality control (QC) pipeline server for quantitative proteomics, automated processing, and interactive visualisations of QC results. The server allows to setup multiple proteomics pipelines grouped by projects
MINNO
Tool for visualization and refinement of metabolic networks for diverse organisms
SCALiR
An app for computing concentrations using standard curves
Digest R
DigestR is a R package specifically designed for the analysis and visualization of complex mixtures of peptides in mass spectrometry-based proteomics data